Convert a BIOM file of OTU abundance data into a CSV of relative abundance data.

usage: [-h] [-i INPUT_BIOM_FP] [-o OUTPUT_TSV_FP] [--stabilize_variance] [-v]

Required arguments

-i INPUT_BIOM_FP, --input_biom_fp INPUT_BIOM_FP

The BIOM file path.

Optional arguments

-o OUTPUT_CSV_FP, --output_csv_fp OUTPUT_CSV_FP

A CSV table of relative OTU abundance data.


Apply the variance-stabilizing arcsine square root transformation to the OTU proportion data.

-h, --help

Show the help message and exit

-v, --verbose

Print detailed information about script operation.