restrict_repset.py
Take a subset BIOM table (e.g. from a core calculation) and a representative
set (repset) FASTA file and create a new repset restricted to the OTUs in the BIOM table.
usage: restrict_repset.py [-h] -i BIOM_FP -r REPSET_FP [-o REPSET_OUT_FP]
Required arguments
-
-i
BIOM_FP
,
--biom_fp
BIOM_FP
Path to a biom-format file with OTU-Sample abundance data.
-
-r
REPSET_FP
,
--repset_fp
REPSET_FP
Path to a FASTA-format file containing the representative set of OTUs.
Optional arguments
-
-o
REPSET_OUT_FP
,
--repset_out_fp
REPSET_OUT_FP
Path to the new restricted repset file.
-
-h
,
--help
Show the help message and exit